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Biomatters Ltd geneious r11 software
Geneious R11 Software, supplied by Biomatters Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/geneious+r11+software/geneious+r11/pmc12993434-81-9-12
Average 86 stars, based on 1 article reviews
geneious r11 software - by Bioz Stars, 2026-10
86/100 stars

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Article Title: Characterization of beta-lactam-resistant Escherichia coli from Australian fruit bats indicates anthropogenic origins
Article Snippet: Sequencing was performed at the Ramaciotti Centre for Genomics (Sydney, NSW, Australia) using Big Dye Terminator chemistry version 3.1 and ABI 3730/3730xl Capillary Sequencers (Applied Biosystems). .. Sequences were manually checked for quality, assembled using Geneious R11 software (Biomatters) and analysed for the presence of AMR genes using Integrall ( http://integrall.bio.ua.pt/?search# ). ..

Article Title: miR-141-3p affects β-catenin signaling and apoptosis by targeting Ubtd2 in rats with anorectal malformations.
Article Snippet: Testing effector knockout strains of the Pseudomonas syringae pv. actinidiae biovar 3 (Psa3) for reduced in planta growth in their native kiwifruit host revealed a number of nonredundant effectors that contribute to Psa3 virulence.. Conversely, complementation in the weak kiwifruit pathogen P. syringae pv. actinidifoliorum (Pfm) for increased growth identified redundant Psa3 effectors.. Psa3 effectors hopAZ1a and HopS2b and the entire exchangeable effector locus (DEEL; 10 effectors) were significant contributors to bacterial colonisation of the host and were additive in their effects on virulence.

Article Title: Chronic Voluntary Alcohol Consumption Alters Promoter Methylation and Expression of Fgf-2 and Fgfr1 .
Article Snippet: Genomic organization of the murine Fgfr1 and Fgf-2 gene was obtained using the ENSEMBL genome browser (https: //doi.org/10.1093/nar/gkaa942, accessed: 22 February 2021, build 103 by the European Bioinformatics Institute (EMBL-EBI). .. Primer sequences were designed using the Geneious R11 software (Biomatters Ltd., Auckland, New Zealand) to cover CpG-sites located immediately upstream and within exon 1 of the Fgf-2 or Fgfr1 gene and purchased from Metabion (Metabion International AG, Steinkirchen, Germany). .. To determine melting temperatures, hairpin-formation, and self-dimer formation, the online tool Netprimer was used (http://www.premierbiosoft.com/netprimer/netprlaunch/netprlaunch.html, accessed: 22 February 2021, by Premier Biosoft).

Article Title: Genomic biosurveillance of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae biovar 3 reveals adaptation to selective pressures in New Zealand orchards
Article Snippet: .. For the identification of hopF1c isolates, primers that flanked the hopF1c gene were designed using Geneious R11 software ( https://www.geneious.com ; Biomatters). ..

Article Title: High-Resolution Community Profiling of Active Bacteria and Eukaryotes in Replant-Diseased Blueberry Farm Soils From New Jersey, USA.
Article Snippet: .. Demultiplexing was performed via a custom workflow using the Geneious R11 software (Biomatters Ltd.), which included: filtering the DNA sequence reads by size (3700–5700 bp for bacterial rRNA operons; 4000–6300 bp for eukaryotic rRNA operons), truncating the assigned ONT 14622920, 2026, 3, [20/03/2026] ..

Article Title: High‐Resolution Community Profiling of Active Bacteria and Eukaryotes in Replant‐Diseased Blueberry Farm Soils From New Jersey, USA
Article Snippet: .. Demultiplexing was performed via a custom workflow using the Geneious R11 software (Biomatters Ltd.), which included: filtering the DNA sequence reads by size (3700–5700 bp for bacterial rRNA operons; 4000–6300 bp for eukaryotic rRNA operons), truncating the assigned ONT name, annotating the reads with barcode primers (90% pairwise identity) and extracting copies of the reads containing specific barcodes into separate folders. ..

Article Title: Detection of chromosome-mediated bla NDM-1 -carrying Aeromonas spp. in the intestinal contents of fresh water river fish in Ho Chi Minh City, Vietnam.
Article Snippet: .. Genomic analysis was performed using Geneious R11 software (Biomatters, Ltd., Auckland, New Zealand), Easyfig, and Proksee (https://proksee.ca/) (Alikhan et al., 2011; Sullivan et al., 2011). .. The genome sequence data were uploaded to the Type (Strain) Genome Server (TYGS), a free bioinformatics platform available at https://tygs. dsmz.de, for whole genome-based taxonomic analysis (Meier-Kolthoff and Göker, 2019).

Sequencing:

Article Title: miR-141-3p affects β-catenin signaling and apoptosis by targeting Ubtd2 in rats with anorectal malformations.
Article Snippet: Testing effector knockout strains of the Pseudomonas syringae pv. actinidiae biovar 3 (Psa3) for reduced in planta growth in their native kiwifruit host revealed a number of nonredundant effectors that contribute to Psa3 virulence.. Conversely, complementation in the weak kiwifruit pathogen P. syringae pv. actinidifoliorum (Pfm) for increased growth identified redundant Psa3 effectors.. Psa3 effectors hopAZ1a and HopS2b and the entire exchangeable effector locus (DEEL; 10 effectors) were significant contributors to bacterial colonisation of the host and were additive in their effects on virulence.

Article Title: High-Resolution Community Profiling of Active Bacteria and Eukaryotes in Replant-Diseased Blueberry Farm Soils From New Jersey, USA.
Article Snippet: .. Demultiplexing was performed via a custom workflow using the Geneious R11 software (Biomatters Ltd.), which included: filtering the DNA sequence reads by size (3700–5700 bp for bacterial rRNA operons; 4000–6300 bp for eukaryotic rRNA operons), truncating the assigned ONT 14622920, 2026, 3, [20/03/2026] ..

Article Title: High‐Resolution Community Profiling of Active Bacteria and Eukaryotes in Replant‐Diseased Blueberry Farm Soils From New Jersey, USA
Article Snippet: .. Demultiplexing was performed via a custom workflow using the Geneious R11 software (Biomatters Ltd.), which included: filtering the DNA sequence reads by size (3700–5700 bp for bacterial rRNA operons; 4000–6300 bp for eukaryotic rRNA operons), truncating the assigned ONT name, annotating the reads with barcode primers (90% pairwise identity) and extracting copies of the reads containing specific barcodes into separate folders. ..



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